Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ENN88293.1XylR-type repressor; Identified by sequence similarity; putative. (417 aa)    
Predicted Functional Partners:
ENN83965.1
Glucose-6-phosphate isomerase protein; Identified by sequence similarity; putative; Belongs to the GPI family.
    
 0.736
noeJ
Mannose-1-phosphate guanylyltransferase (GDP) protein; Identified by sequence similarity; putative; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
 0.731
ENN84159.1
N-acetylglucosamine-6-phosphate deacetylase; Identified by sequence similarity; putative.
 
 
 0.721
ENN87986.1
Putative alpha-glucosidase protein; Identified by sequence similarity; putative.
 
  
 0.693
galM
Putative aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
  
 0.685
aglA
Identified by sequence similarity; putative.
 
  
 0.684
ENN84634.1
Amino acid adenylation; Identified by sequence similarity; putative; overlaps another CDS with the same product name.
  
 
 0.675
fixP
Cbb3-type cytochrome c oxidase subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
     
  0.663
rkpA
Putative type I polyketide synthase RkpA; Identified by sequence similarity; putative.
  
 
 0.662
cbbT
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
 
 0.659
Your Current Organism:
Rhizobium freirei
NCBI taxonomy Id: 363754
Other names: R. freirei PRF 81, Rhizobium freirei PRF 81, Rhizobium sp. PRF 81
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