Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ENN84634.1 | ENN86834.1 | RHSP_69365 | RHSP_31483 | Amino acid adenylation; Identified by sequence similarity; putative; overlaps another CDS with the same product name. | Hypothetical protein. | 0.969 |
ENN84634.1 | polA | RHSP_69365 | RHSP_72524 | Amino acid adenylation; Identified by sequence similarity; putative; overlaps another CDS with the same product name. | DNA-directed DNA polymerase, DNA polymerase I protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.853 |
ENN84634.1 | rpmC | RHSP_69365 | RHSP_82807 | Amino acid adenylation; Identified by sequence similarity; putative; overlaps another CDS with the same product name. | LSU ribosomal protein L29p; Identified by sequence similarity; putative; Belongs to the universal ribosomal protein uL29 family. | 0.710 |
ENN85693.1 | ENN86834.1 | RHSP_82777 | RHSP_31483 | Hypothetical protein; Belongs to the SecE/SEC61-gamma family. | Hypothetical protein. | 0.979 |
ENN85693.1 | rplY | RHSP_82777 | RHSP_49208 | Hypothetical protein; Belongs to the SecE/SEC61-gamma family. | Putative 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.985 |
ENN85693.1 | rpmC | RHSP_82777 | RHSP_82807 | Hypothetical protein; Belongs to the SecE/SEC61-gamma family. | LSU ribosomal protein L29p; Identified by sequence similarity; putative; Belongs to the universal ribosomal protein uL29 family. | 0.977 |
ENN85693.1 | secB | RHSP_82777 | RHSP_20945 | Hypothetical protein; Belongs to the SecE/SEC61-gamma family. | Protein-export protein Sec B; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. | 0.756 |
ENN85693.1 | secD | RHSP_82777 | RHSP_14159 | Hypothetical protein; Belongs to the SecE/SEC61-gamma family. | Putative protein-export membrane protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.993 |
ENN85693.1 | secD-2 | RHSP_82777 | RHSP_71454 | Hypothetical protein; Belongs to the SecE/SEC61-gamma family. | Transmembrane export SecD/F family protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.993 |
ENN85693.1 | secY | RHSP_82777 | RHSP_15444 | Hypothetical protein; Belongs to the SecE/SEC61-gamma family. | Preprotein translocase subunit secY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.997 |
ENN86499.1 | ENN86834.1 | RHSP_09233 | RHSP_31483 | Alkaline phosphatase; Identified by sequence similarity; putative; Belongs to the alkaline phosphatase family. | Hypothetical protein. | 0.957 |
ENN86499.1 | secB | RHSP_09233 | RHSP_20945 | Alkaline phosphatase; Identified by sequence similarity; putative; Belongs to the alkaline phosphatase family. | Protein-export protein Sec B; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. | 0.960 |
ENN86834.1 | ENN84634.1 | RHSP_31483 | RHSP_69365 | Hypothetical protein. | Amino acid adenylation; Identified by sequence similarity; putative; overlaps another CDS with the same product name. | 0.969 |
ENN86834.1 | ENN85693.1 | RHSP_31483 | RHSP_82777 | Hypothetical protein. | Hypothetical protein; Belongs to the SecE/SEC61-gamma family. | 0.979 |
ENN86834.1 | ENN86499.1 | RHSP_31483 | RHSP_09233 | Hypothetical protein. | Alkaline phosphatase; Identified by sequence similarity; putative; Belongs to the alkaline phosphatase family. | 0.957 |
ENN86834.1 | polA | RHSP_31483 | RHSP_72524 | Hypothetical protein. | DNA-directed DNA polymerase, DNA polymerase I protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.906 |
ENN86834.1 | rplY | RHSP_31483 | RHSP_49208 | Hypothetical protein. | Putative 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.790 |
ENN86834.1 | rpmC | RHSP_31483 | RHSP_82807 | Hypothetical protein. | LSU ribosomal protein L29p; Identified by sequence similarity; putative; Belongs to the universal ribosomal protein uL29 family. | 0.949 |
ENN86834.1 | secB | RHSP_31483 | RHSP_20945 | Hypothetical protein. | Protein-export protein Sec B; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. | 0.979 |
ENN86834.1 | secD | RHSP_31483 | RHSP_14159 | Hypothetical protein. | Putative protein-export membrane protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.888 |
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