STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutHHistidine ammonia-lyase; Identified by sequence similarity; putative. (508 aa)    
Predicted Functional Partners:
hutU-2
Urocanase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
 0.981
hutU
Urocanate hydratase; Identified by sequence similarity; putative.
 
 
 0.978
hutI
Imidazolone-5-propionate hydrolase; Identified by sequence similarity; putative.
 
  
 0.970
ENN84634.1
Amino acid adenylation; Identified by sequence similarity; putative; overlaps another CDS with the same product name.
    
 0.781
ENN88806.1
Putative glucosyll hydrolase; Identified by sequence similarity; putative.
   
    0.720
atzA
Atrazine chlorohydrolase; Identified by sequence similarity; putative.
 
 
 0.719
ENN86780.1
Putative transcriptional regulator protein; Identified by sequence similarity; putative.
 
  
 0.638
stcD
Putative N-methylproline demethylase; Identified by sequence similarity; putative.
     
 0.632
ENN88101.1
Ornithine cyclodeaminase; Identified by sequence similarity; putative.
 
    0.569
ENN85912.1
Proclavaminate amidinohydrolase; Identified by sequence similarity; putative; Belongs to the arginase family.
 
 
 0.551
Your Current Organism:
Rhizobium freirei
NCBI taxonomy Id: 363754
Other names: R. freirei PRF 81, Rhizobium freirei PRF 81, Rhizobium sp. PRF 81
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.