ENN88172.1 protein (Rhizobium freirei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENN88172.1

Putative amino acid ABC transporter; Identified by sequence similarity; putative. (338 aa)

Predicted Functional Partners:

yecC

0.954

ENN88171.1

0.923

ENN85149.1

0.819

ENN88175.1

0.800

ENN88173.1

0.780

ENN84664.1

0.772

ENN85492.1

0.756

yxeK

0.706

ENN88028.1

0.678

ENN84618.1

0.671

Your Current Organism:

Rhizobium freirei

NCBI taxonomy Id: 363754
Other names: R. freirei PRF 81, Rhizobium freirei PRF 81, Rhizobium sp. PRF 81

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENN84618.1	ENN84664.1	RHSP_40754	RHSP_69009	Diguanylate cyclase/phosphodiesterase; Identified by sequence similarity; putative.	Two-component sensor histidine kinase protein; Identified by sequence similarity; putative.	0.998
ENN84618.1	ENN88028.1	RHSP_40754	RHSP_50944	Diguanylate cyclase/phosphodiesterase; Identified by sequence similarity; putative.	Putative two-component sensor histidine kinase transcriptional regulatory protein; Identified by sequence similarity; putative.	0.996
ENN84618.1	ENN88172.1	RHSP_40754	RHSP_39644	Diguanylate cyclase/phosphodiesterase; Identified by sequence similarity; putative.	Putative amino acid ABC transporter; Identified by sequence similarity; putative.	0.671
ENN84618.1	ENN88173.1	RHSP_40754	RHSP_39653	Diguanylate cyclase/phosphodiesterase; Identified by sequence similarity; putative.	Amino acid ABC transporter; Identified by sequence similarity; putative.	0.671
ENN84664.1	ENN84618.1	RHSP_69009	RHSP_40754	Two-component sensor histidine kinase protein; Identified by sequence similarity; putative.	Diguanylate cyclase/phosphodiesterase; Identified by sequence similarity; putative.	0.998
ENN84664.1	ENN88028.1	RHSP_69009	RHSP_50944	Two-component sensor histidine kinase protein; Identified by sequence similarity; putative.	Putative two-component sensor histidine kinase transcriptional regulatory protein; Identified by sequence similarity; putative.	0.996
ENN84664.1	ENN88172.1	RHSP_69009	RHSP_39644	Two-component sensor histidine kinase protein; Identified by sequence similarity; putative.	Putative amino acid ABC transporter; Identified by sequence similarity; putative.	0.772
ENN84664.1	ENN88173.1	RHSP_69009	RHSP_39653	Two-component sensor histidine kinase protein; Identified by sequence similarity; putative.	Amino acid ABC transporter; Identified by sequence similarity; putative.	0.772
ENN85149.1	ENN85492.1	RHSP_56409	RHSP_07550	Polar amino acid ABC transporter, inner membrane subunit; Identified by sequence similarity; putative.	Putative ABC transporter permease protein; Identified by sequence similarity; putative.	0.428
ENN85149.1	ENN88172.1	RHSP_56409	RHSP_39644	Polar amino acid ABC transporter, inner membrane subunit; Identified by sequence similarity; putative.	Putative amino acid ABC transporter; Identified by sequence similarity; putative.	0.819
ENN85149.1	ENN88173.1	RHSP_56409	RHSP_39653	Polar amino acid ABC transporter, inner membrane subunit; Identified by sequence similarity; putative.	Amino acid ABC transporter; Identified by sequence similarity; putative.	0.819
ENN85149.1	yecC	RHSP_56409	RHSP_39663	Polar amino acid ABC transporter, inner membrane subunit; Identified by sequence similarity; putative.	Amino acid ABC transporter, ATP-binding protein; Identified by sequence similarity; putative.	0.626
ENN85492.1	ENN85149.1	RHSP_07550	RHSP_56409	Putative ABC transporter permease protein; Identified by sequence similarity; putative.	Polar amino acid ABC transporter, inner membrane subunit; Identified by sequence similarity; putative.	0.428
ENN85492.1	ENN88172.1	RHSP_07550	RHSP_39644	Putative ABC transporter permease protein; Identified by sequence similarity; putative.	Putative amino acid ABC transporter; Identified by sequence similarity; putative.	0.756
ENN85492.1	ENN88173.1	RHSP_07550	RHSP_39653	Putative ABC transporter permease protein; Identified by sequence similarity; putative.	Amino acid ABC transporter; Identified by sequence similarity; putative.	0.753
ENN85492.1	yecC	RHSP_07550	RHSP_39663	Putative ABC transporter permease protein; Identified by sequence similarity; putative.	Amino acid ABC transporter, ATP-binding protein; Identified by sequence similarity; putative.	0.658
ENN88028.1	ENN84618.1	RHSP_50944	RHSP_40754	Putative two-component sensor histidine kinase transcriptional regulatory protein; Identified by sequence similarity; putative.	Diguanylate cyclase/phosphodiesterase; Identified by sequence similarity; putative.	0.996
ENN88028.1	ENN84664.1	RHSP_50944	RHSP_69009	Putative two-component sensor histidine kinase transcriptional regulatory protein; Identified by sequence similarity; putative.	Two-component sensor histidine kinase protein; Identified by sequence similarity; putative.	0.996
ENN88028.1	ENN88172.1	RHSP_50944	RHSP_39644	Putative two-component sensor histidine kinase transcriptional regulatory protein; Identified by sequence similarity; putative.	Putative amino acid ABC transporter; Identified by sequence similarity; putative.	0.678
ENN88028.1	ENN88173.1	RHSP_50944	RHSP_39653	Putative two-component sensor histidine kinase transcriptional regulatory protein; Identified by sequence similarity; putative.	Amino acid ABC transporter; Identified by sequence similarity; putative.	0.678