Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ENN87953.1RNA polymerase sigma factor protein; Identified by sequence similarity; putative; Belongs to the sigma-70 factor family. ECF subfamily. (170 aa)    
Predicted Functional Partners:
ENN87954.1
Hypothetical protein.
 
 
 0.920
ENN87678.1
Hypothetical protein.
 
 
 0.722
ENN88064.1
RNA polymerase sigma subunit; Identified by sequence similarity; putative; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.710
ENN86847.1
Putative transmembrane protein; Identified by sequence similarity; putative.
 
 
 0.698
rpoC
DNA-directed RNA polymerase beta' chain; Identified by sequence similarity; putative.
    
 
 0.678
rpoB
DNA-directed RNA polymerase protein, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.667
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.653
ENN88631.1
Putative RNA polymerase sigma subunit; Identified by sequence similarity; putative; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.645
ENN87561.1
Transmembrane transcriptional regulator; Identified by sequence similarity; putative.
  
 
 0.631
rpoZ
RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.614
Your Current Organism:
Rhizobium freirei
NCBI taxonomy Id: 363754
Other names: R. freirei PRF 81, Rhizobium freirei PRF 81, Rhizobium sp. PRF 81
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