Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fdxBFerredoxin; Identified by sequence similarity; putative. (106 aa)    
Predicted Functional Partners:
nifU
NifU-like protein; Identified by sequence similarity; putative.
  
 0.949
ENN84815.1
NifU-like N terminal domain-containing protein; Identified by sequence similarity; putative.
  
 0.942
ENN86259.1
Putative ferredoxin reductase protein; Identified by sequence similarity; putative.
 
 
 0.921
ENN84634.1
Amino acid adenylation; Identified by sequence similarity; putative; overlaps another CDS with the same product name.
   
 0.917
rkpA
Putative type I polyketide synthase RkpA; Identified by sequence similarity; putative.
   
 0.909
mocF
Ferredoxin reductase protein; Identified by sequence similarity; putative.
 
 
 0.905
nifS
Cysteine desulfurase protein; Identified by sequence similarity; putative.
 
 0.892
ENN84814.1
Pyridoxal-phosphate-dependent aminotransferase protein; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
 
 0.888
ENN89135.1
FeS assembly scaffold SufA; Identified by sequence similarity; putative; Belongs to the HesB/IscA family.
 
 0.881
ENN86949.1
Hypothetical protein; Belongs to the HesB/IscA family.
 
 0.847
Your Current Organism:
Rhizobium freirei
NCBI taxonomy Id: 363754
Other names: R. freirei PRF 81, Rhizobium freirei PRF 81, Rhizobium sp. PRF 81
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