Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENN89206.1Hypothetical protein. (491 aa)    
Predicted Functional Partners:
ENN89207.1
Hypothetical protein.
 
  
 0.994
ENN84513.1
Peptidase U6 penicillin-insensitive murein endopeptidase; Identified by sequence similarity; putative.
  
     0.706
ybiS
Putative protein ybiS; Identified by sequence similarity; putative.
  
     0.697
ENN86147.1
Hypothetical protein.
  
     0.688
ENN86146.1
Hypothetical protein.
  
     0.687
ENN84365.1
Hypothetical protein.
  
     0.681
ENN89208.1
Hypothetical protein.
       0.644
ENN89205.1
Hypothetical protein.
       0.638
ENN89062.1
Invasion associated locus B; Identified by sequence similarity; putative.
  
     0.636
ENN84946.1
Hypothetical protein.
  
     0.636
Your Current Organism:
Rhizobium freirei
NCBI taxonomy Id: 363754
Other names: R. freirei PRF 81, Rhizobium freirei PRF 81, Rhizobium sp. PRF 81
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