Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
ENN89172.1Hypothetical protein. (204 aa)    
Predicted Functional Partners:
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
     
  0.836
kdtA
Three-deoxy-D-manno-octulosonic-acid transferase domain protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
     
  0.836
ENN87859.1
Putative aminoglycoside 3'-phosphotransferase protein; Identified by sequence similarity; putative; Belongs to the aminoglycoside phosphotransferase family.
  
     0.567
ENN87841.1
Hypothetical protein.
  
     0.566
ENN87168.1
Hypothetical protein.
  
     0.556
ENN89394.1
Hypothetical protein.
  
     0.531
ENN89171.1
Transcriptional regulator, GntR family with aminotransferase; Identified by sequence similarity; putative.
       0.504
ENN87834.1
Phage-associated protein, HI1409 family; Identified by sequence similarity; putative.
  
     0.454
ENN88627.1
Protein of unknown function DUF1236; Identified by sequence similarity; putative.
  
     0.442
ENN88240.1
Hypothetical protein.
  
     0.407
Your Current Organism:
Rhizobium freirei
NCBI taxonomy Id: 363754
Other names: R. freirei PRF 81, Rhizobium freirei PRF 81, Rhizobium sp. PRF 81
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