Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENN89706.1ArsR family transcriptional regulator; Identified by sequence similarity; putative. (188 aa)    
Predicted Functional Partners:
ENN89091.1
Hypothetical protein.
 
     0.772
ENN89451.1
NIPSNAP family containing protein; Identified by sequence similarity; putative.
 
     0.765
ENN89092.1
Hypothetical protein.
 
     0.758
ENN89705.1
Putative DNA-binding protein transcriptional regulator; Identified by sequence similarity; putative.
       0.475
ENN89704.1
Hypothetical protein.
       0.475
ENN84245.1
Hypothetical protein.
  
     0.458
ENN84634.1
Amino acid adenylation; Identified by sequence similarity; putative; overlaps another CDS with the same product name.
     
 0.434
Your Current Organism:
Rhizobium freirei
NCBI taxonomy Id: 363754
Other names: R. freirei PRF 81, Rhizobium freirei PRF 81, Rhizobium sp. PRF 81
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