Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
ENN84544.1Conjugal transfer TraD; Identified by sequence similarity; putative. (81 aa)    
Predicted Functional Partners:
ENN84545.1
Putative conjugal transfert protein, TraC; Identified by sequence similarity; putative.
       0.816
ENN84546.1
Conjugal transfer protein; Identified by sequence similarity; putative.
       0.543
ENN84547.1
Putative conjugal transfer protein traA; Identified by sequence similarity; putative.
       0.543
ENN84548.1
Conjugal transfer relaxase TraA; Identified by sequence similarity; putative.
       0.543
Your Current Organism:
Rhizobium freirei
NCBI taxonomy Id: 363754
Other names: R. freirei PRF 81, Rhizobium freirei PRF 81, Rhizobium sp. PRF 81
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