Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ENN88396.1Xylose isomerase domain protein TIM barrel; Identified by sequence similarity; putative. (282 aa)    
Predicted Functional Partners:
ENN88395.1
ABC transporter, membrane spanning protein; Identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family.
 
    0.861
ENN88394.1
ABC transporter, membrane spanning protein; Identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family.
 
    0.856
ENN88393.1
ABC transporter, nucleotide binding protein/ATPase protein; Identified by sequence similarity; putative.
 
     0.798
ENN88392.1
ABC transporter, substrate binding protein; Identified by sequence similarity; putative.
 
     0.787
ENN85625.1
Putative L-xylulose kinase; Identified by sequence similarity; putative; Belongs to the FGGY kinase family.
  
  
  0.743
ENN85631.1
L-xylulose kinase protein; Identified by sequence similarity; putative; Belongs to the FGGY kinase family.
  
  
  0.738
xylB
Putative xylulose kinase; Identified by sequence similarity; putative.
     
  0.649
ENN88397.1
Hypothetical protein.
       0.628
ENN88236.1
Putative aldolase, possibly L-fuculose-phosphate aldolase protein; Identified by sequence similarity; putative.
 
  
  0.626
ypeO
Sugar epimerase protein; Identified by sequence similarity; putative.
 
 
  0.589
Your Current Organism:
Rhizobium freirei
NCBI taxonomy Id: 363754
Other names: R. freirei PRF 81, Rhizobium freirei PRF 81, Rhizobium sp. PRF 81
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