Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENN84237.1Hypothetical protein. (88 aa)    
Predicted Functional Partners:
ENN84240.1
Membrane protein; Identified by sequence similarity; putative.
 
  
 0.857
ENN85546.1
T4SS VirB3; Identified by sequence similarity; putative.
   
    0.782
ENN84235.1
Hypothetical protein.
 
   
 0.759
ENN84238.1
Hypothetical protein.
 
    
0.642
ENN84236.1
RNA polymerase sigma factor protein; Identified by sequence similarity; putative; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.637
ENN86708.1
Polypeptide-transport-associated domain protein ShlB-type; Identified by sequence similarity; putative.
   
    0.620
ENN84047.1
Hypothetical protein.
   
    0.620
ENN85550.1
Transport secretion system IV protein, VirB8; Identified by sequence similarity; putative.
   
    0.604
ENN88111.1
Fimbrial biogenesis outer membrane usher protein; Identified by sequence similarity; putative.
   
    0.594
ENN85547.1
T4SS VirB4; Identified by sequence similarity; putative.
   
    0.590
Your Current Organism:
Rhizobium freirei
NCBI taxonomy Id: 363754
Other names: R. freirei PRF 81, Rhizobium freirei PRF 81, Rhizobium sp. PRF 81
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