STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHD86424.1Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (459 aa)    
Predicted Functional Partners:
KHD86364.1
Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.936
KHD86363.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.927
KHD86362.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.895
KHD86365.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
KHD86368.1
Phage major capsid protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.753
KHD86367.1
Prophage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.743
KHD86848.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.714
KHD85695.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.706
KHD86629.1
Oligo-1,6-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.692
KHD84354.1
Glycoside hydrolase family 15; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.690
Your Current Organism:
Bacillus ginsengihumi
NCBI taxonomy Id: 363870
Other names: B. ginsengihumi, Bacillus ginsengihumi Ten et al. 2007, DSM 18134, KCTC 13944, strain Gsoil 114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.