STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaBRhamnulokinase; Involved in the catabolism of L-rhamnose (6-deoxy-L-mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1- hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate. Belongs to the rhamnulokinase family. (490 aa)    
Predicted Functional Partners:
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.
 
 
 0.993
rhaA
Sugar isomerase; Catalyzes the formation of L-rhamnulose from L-rhamnose; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.992
KHD85894.1
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.
 
  
 0.978
KHD85895.1
Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.799
fucI
Sugar isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.
 
 
 0.794
KHD84339.1
Fucose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RbsD / FucU family.
 
 
 0.640
araD
Catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.591
KHD84723.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.584
KHD84340.1
Fuculose phosphate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.526
KHD86004.1
PTS fructose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.510
Your Current Organism:
Bacillus ginsengihumi
NCBI taxonomy Id: 363870
Other names: B. ginsengihumi, Bacillus ginsengihumi Ten et al. 2007, DSM 18134, KCTC 13944, strain Gsoil 114
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