STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHD85306.1Carbohydrate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)    
Predicted Functional Partners:
KHD85298.1
D-galactarate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.971
KHD85293.1
2-dehydro-3-deoxygluconokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.701
KHD85297.1
Catalyzes the formation of oxalurate from ureidoglycolate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family.
    
 0.643
KHD85305.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.623
KHD85299.1
2-hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
   0.619
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
 
 0.615
KHD85295.1
Galactonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.562
mtlD
Mannitol-1-phosphate 5-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.542
KHD85296.1
2-keto-3-deoxy-galactonate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DapA family.
    
 0.493
KHD86794.1
3-ketoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.458
Your Current Organism:
Bacillus ginsengihumi
NCBI taxonomy Id: 363870
Other names: B. ginsengihumi, Bacillus ginsengihumi Ten et al. 2007, DSM 18134, KCTC 13944, strain Gsoil 114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.