STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHD85073.1Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (91 aa)    
Predicted Functional Partners:
KHD84539.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.586
KHD86045.1
DNA alkylation repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.512
KHD85795.1
CotJA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.461
KHD85796.1
cotJB protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.459
KHD84198.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.418
KHD85797.1
CotJC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.417
KHD86384.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.403
Your Current Organism:
Bacillus ginsengihumi
NCBI taxonomy Id: 363870
Other names: B. ginsengihumi, Bacillus ginsengihumi Ten et al. 2007, DSM 18134, KCTC 13944, strain Gsoil 114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.