STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHD84813.1XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (644 aa)    
Predicted Functional Partners:
KHD84810.1
rRNA biogenesis protein rrp5; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.913
KHD84811.1
Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.911
KHD84812.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.911
KHD84809.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.910
KHD84808.1
FliA/WhiG subfamily RNA polymerase sigma-28 subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.873
KHD84816.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.804
KHD84817.1
Phage-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.804
KHD84818.1
Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.804
KHD84815.1
Antirepressor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.789
KHD85698.1
Holin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.759
Your Current Organism:
Bacillus ginsengihumi
NCBI taxonomy Id: 363870
Other names: B. ginsengihumi, Bacillus ginsengihumi Ten et al. 2007, DSM 18134, KCTC 13944, strain Gsoil 114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.