Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKO27_g8582Uncharacterized protein. (420 aa)    
Predicted Functional Partners:
EKO27_g4738
Skp1_POZ domain-containing protein; Belongs to the SKP1 family.
    
   0.889
EKO27_g1233
Elp3 domain-containing protein.
    
   0.870
EKO27_g10502
Ubiquitin-like domain-containing protein.
    
   0.803
EKO27_g778
UBX domain-containing protein.
    
   0.707
EKO27_g3089
RING-type domain-containing protein.
    
   0.626
EKO27_g9304
Ubiquitin-like domain-containing protein.
    
   0.594
EKO27_g6894
Ubiquitin-like domain-containing protein.
    
   0.594
EKO27_g273
BZIP domain-containing protein.
    
   0.594
ADI1
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).
    
   0.491
EKO27_g10388
Ribosomal_L2_C domain-containing protein.
   
  
 0.486
Your Current Organism:
Xylaria grammica
NCBI taxonomy Id: 363999
Other names: X. grammica, Xylaria sp. 5091, Xylaria sp. 5129, Xylariaceae sp. 5129, Xylariaceae sp. 5151, Xylariaceae sp. 5228
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