Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKO27_g8749Uncharacterized protein. (404 aa)    
Predicted Functional Partners:
EKO27_g9627
Uncharacterized protein.
    
 0.683
EKO27_g10502
Ubiquitin-like domain-containing protein.
    
  0.579
EKO27_g786
Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.
    
  0.573
EKO27_g10331
Uncharacterized protein.
    
 0.569
EKO27_g5814
Uncharacterized protein.
    
 0.569
EKO27_g3542
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
    
  0.559
EKO27_g3950
Uncharacterized protein.
    
  0.530
EKO27_g10877
ANK_REP_REGION domain-containing protein.
    
 0.527
EKO27_g10876
Rhomboid domain-containing protein.
    
  0.514
EKO27_g9304
Ubiquitin-like domain-containing protein.
    
  0.498
Your Current Organism:
Xylaria grammica
NCBI taxonomy Id: 363999
Other names: X. grammica, Xylaria sp. 5091, Xylaria sp. 5129, Xylariaceae sp. 5129, Xylariaceae sp. 5151, Xylariaceae sp. 5228
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