EKO27_g8749 protein (Xylaria grammica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EKO27_g8749

Uncharacterized protein. (404 aa)

Predicted Functional Partners:

EKO27_g9627

0.657

EKO27_g10502

0.645

EKO27_g10704

0.644

EKO27_g10331

0.641

EKO27_g5814

0.641

EKO27_g10388

0.625

EKO27_g3950

0.603

EKO27_g10686

0.597

EKO27_g1421

0.592

EKO27_g1422

0.592

Your Current Organism:

Xylaria grammica

NCBI taxonomy Id: 363999
Other names: X. grammica, Xylaria sp. 5091, Xylaria sp. 5129, Xylariaceae sp. 5129, Xylariaceae sp. 5151, Xylariaceae sp. 5228

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EKO27_g10331	EKO27_g10502	A0A439CRH8	A0A439CR84	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.585
EKO27_g10331	EKO27_g1421	A0A439CRH8	A0A439DH07	Uncharacterized protein.	MPN domain-containing protein.	0.467
EKO27_g10331	EKO27_g1422	A0A439CRH8	A0A439DH29	Uncharacterized protein.	Uncharacterized protein.	0.467
EKO27_g10331	EKO27_g5814	A0A439CRH8	A0A439D4G5	Uncharacterized protein.	Uncharacterized protein.	0.931
EKO27_g10331	EKO27_g8749	A0A439CRH8	A0A439CWC5	Uncharacterized protein.	Uncharacterized protein.	0.641
EKO27_g10331	EKO27_g9627	A0A439CRH8	A0A439CTI3	Uncharacterized protein.	Uncharacterized protein.	0.933
EKO27_g10388	EKO27_g10502	A0A439CRF6	A0A439CR84	Ribosomal_L2_C domain-containing protein.	Ubiquitin-like domain-containing protein.	0.994
EKO27_g10388	EKO27_g10686	A0A439CRF6	A0A439CQQ0	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	0.981
EKO27_g10388	EKO27_g10704	A0A439CRF6	A0A439CQJ7	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.995
EKO27_g10388	EKO27_g3950	A0A439CRF6	A0A439D9T3	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.429
EKO27_g10388	EKO27_g8749	A0A439CRF6	A0A439CWC5	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.625
EKO27_g10502	EKO27_g10331	A0A439CR84	A0A439CRH8	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.585
EKO27_g10502	EKO27_g10388	A0A439CR84	A0A439CRF6	Ubiquitin-like domain-containing protein.	Ribosomal_L2_C domain-containing protein.	0.994
EKO27_g10502	EKO27_g10686	A0A439CR84	A0A439CQQ0	Ubiquitin-like domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	0.999
EKO27_g10502	EKO27_g10704	A0A439CR84	A0A439CQJ7	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.999
EKO27_g10502	EKO27_g1421	A0A439CR84	A0A439DH07	Ubiquitin-like domain-containing protein.	MPN domain-containing protein.	0.955
EKO27_g10502	EKO27_g1422	A0A439CR84	A0A439DH29	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.955
EKO27_g10502	EKO27_g5814	A0A439CR84	A0A439D4G5	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.475
EKO27_g10502	EKO27_g8749	A0A439CR84	A0A439CWC5	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.645
EKO27_g10502	EKO27_g9627	A0A439CR84	A0A439CTI3	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.585