STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKO27_g4317Uncharacterized protein. (265 aa)    
Predicted Functional Partners:
EKO27_g5348
YTH domain-containing protein.
    
 0.997
EKO27_g10788
Fip1 domain-containing protein.
   
 0.984
EKO27_g9513
Uncharacterized protein.
    
 0.961
EKO27_g4172
Uncharacterized protein.
    
 0.939
EKO27_g10474
Cleavage and polyadenylation specificity factor subunit 2.
   
 
 0.907
EKO27_g3537
CID domain-containing protein.
    
 0.896
EKO27_g1310
RRM domain-containing protein.
   
 0.883
CLP1
mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.
   
 0.869
EKO27_g8076
Suf domain-containing protein.
   
 
 0.864
EKO27_g8761
Uncharacterized protein.
   
 
 0.851
Your Current Organism:
Xylaria grammica
NCBI taxonomy Id: 363999
Other names: X. grammica, Xylaria sp. 5091, Xylaria sp. 5129, Xylariaceae sp. 5129, Xylariaceae sp. 5151, Xylariaceae sp. 5228
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.