STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKO27_g910Uncharacterized protein. (2846 aa)    
Predicted Functional Partners:
EKO27_g5792
Uncharacterized protein.
    
  0.756
EKO27_g1551
RNA_pol_L_2 domain-containing protein.
    
  0.756
EKO27_g11639
RPOLD domain-containing protein.
    
  0.755
EKO27_g5340
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
  0.755
EKO27_g1894
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.755
EKO27_g1002
Uncharacterized protein.
    
  0.755
EKO27_g6642
Uncharacterized protein.
    
  0.754
EKO27_g2324
RPOL9 domain-containing protein.
    
  0.754
EKO27_g2368
RPOL4c domain-containing protein.
    
  0.752
EKO27_g9948
Uncharacterized protein.
    
  0.750
Your Current Organism:
Xylaria grammica
NCBI taxonomy Id: 363999
Other names: X. grammica, Xylaria sp. 5091, Xylaria sp. 5129, Xylariaceae sp. 5129, Xylariaceae sp. 5151, Xylariaceae sp. 5228
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