STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKO27_g812Uncharacterized protein. (1008 aa)    
Predicted Functional Partners:
EKO27_g10502
Ubiquitin-like domain-containing protein.
   
0.996
EKO27_g4918
UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.
   
 0.996
EKO27_g10691
HECT domain-containing protein.
   
 0.995
EKO27_g8408
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.994
EKO27_g10467
Proteasome subunit beta.
   
 0.992
EKO27_g5890
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.992
EKO27_g2365
VWFA domain-containing protein.
   
 0.992
EKO27_g953
Ubiquitin carboxyl-terminal hydrolase.
   
 0.991
EKO27_g4591
Vacuolar protein sorting-associated protein 27; Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane.
    
  0.988
EKO27_g8589
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.986
Your Current Organism:
Xylaria grammica
NCBI taxonomy Id: 363999
Other names: X. grammica, Xylaria sp. 5091, Xylaria sp. 5129, Xylariaceae sp. 5129, Xylariaceae sp. 5151, Xylariaceae sp. 5228
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.