STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIN71189.1BMC domain-containing protein. (98 aa)    
Predicted Functional Partners:
SIN71148.1
Carboxysome peptide A.
 
 
 
 0.972
SIN71163.1
Carboxysome shell and ethanolamine utilization microcompartment protein CcmK/EutM.
 
 
 
 0.969
SIN71260.1
BMC domain-containing protein.
 
 
   0.938
SIN71131.1
Carboxysome shell carbonic anhydrase.
 
   
 0.738
SIN71119.1
Carboxysome shell peptide mid-region.
 
   
 0.713
SIN71177.1
BMC domain-containing protein.
 
    
0.652
SIN71218.1
Pterin-4a-carbinolamine dehydratase.
       0.618
SIN71203.1
Bacterioferritin.
       0.617
SIN71232.1
Hypothetical protein.
       0.520
SIN71103.1
Ribulose 1,5-bisphosphate carboxylase small subunit.
   
 
 0.446
Your Current Organism:
Sulfurivirga caldicuralii
NCBI taxonomy Id: 364032
Other names: DSM 17737, JCM 13439, S. caldicuralii, Sulfurivirga caldicuralii Takai et al. 2006, strain MM1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.