STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIN91306.1Hypothetical protein. (405 aa)    
Predicted Functional Partners:
SIO12238.1
Protein of unknown function.
  
     0.704
SIN88325.1
BNR repeat-like domain-containing protein.
  
     0.668
SIN70794.1
DNA polymerase-3 subunit epsilon.
  
     0.666
SIN69973.1
Endonuclease YncB, thermonuclease family.
  
     0.655
SIN78236.1
Hypothetical protein.
  
     0.647
SIO11635.1
Hypothetical protein.
  
     0.647
SIN72550.1
HD-like signal output (HDOD) domain, no enzymatic activity.
  
     0.603
SIN91247.1
Peptidoglycan-binding protein, CsiV.
       0.560
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.560
SIN76111.1
Glycosyl transferase family 2.
  
     0.559
Your Current Organism:
Sulfurivirga caldicuralii
NCBI taxonomy Id: 364032
Other names: DSM 17737, JCM 13439, S. caldicuralii, Sulfurivirga caldicuralii Takai et al. 2006, strain MM1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.