STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIN93210.1Peptide/nickel transport system permease protein. (428 aa)    
Predicted Functional Partners:
SIN93236.1
Peptide/nickel transport system permease protein.
 
 0.999
SIN93182.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.997
SIN93261.1
ABC-type transport system, substrate-binding protein.
 
 0.997
SIN88867.1
Peptide/nickel transport system permease protein.
 
 0.983
SIN88809.1
Peptide/nickel transport system substrate-binding protein.
 0.947
SIN88893.1
Peptide/nickel transport system permease protein.
  
  
 
0.906
SIN93285.1
Enoyl-[acyl-carrier-protein] reductase [NADH].
       0.565
SIN93311.1
Protease-4.
       0.412
SIN72163.1
Diguanylate cyclase (GGDEF) domain-containing protein.
      
 0.403
Your Current Organism:
Sulfurivirga caldicuralii
NCBI taxonomy Id: 364032
Other names: DSM 17737, JCM 13439, S. caldicuralii, Sulfurivirga caldicuralii Takai et al. 2006, strain MM1
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