STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCM_004725Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (210 aa)    
Predicted Functional Partners:
TCM_006138
Elongation factor 1-gamma 3 isoform 1.
   
 
 0.999
TCM_015575
60S ribosomal protein L9-1 isoform 1.
  
 0.991
TCM_021330
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.990
TCM_000226
Ribosomal protein L2 family.
  
 0.989
TCM_019982
Ribosomal L38e protein family; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 0.982
TCM_007208
Ribosomal protein S14p/S29e family protein.
  
 0.980
TCM_022089
Ribosomal protein S12/S23 family protein isoform 1; Belongs to the universal ribosomal protein uS12 family.
   
 
 0.980
TCM_005784
Zinc-binding ribosomal protein family protein.
   
 
 0.978
TCM_035364
Sequence-specific DNA binding transcription factors.
   
 
 0.978
TCM_015253
RNA binding Plectin/S10 domain-containing protein.
   
 
 0.976
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.