STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCM_033963tRNA-processing ribonuclease BN. (358 aa)    
Predicted Functional Partners:
TCM_041953
Chitinase 1; Belongs to the glycosyl hydrolase 18 family.
  
     0.438
TCM_041958
Chitinase 1; Belongs to the glycosyl hydrolase 18 family.
  
     0.435
TCM_019504
Uncharacterized protein isoform 1.
  
     0.434
TCM_020756
RING-type E3 ubiquitin transferase.
  
     0.425
TCM_041948
Chitinase 1; Belongs to the glycosyl hydrolase 18 family.
  
     0.421
TCM_010315
Leucine-rich repeat-containing protein 50.
  
     0.417
TCM_021550
Uncharacterized protein isoform 1.
  
     0.417
TCM_041971
Chitinase 1; Belongs to the glycosyl hydrolase 18 family.
  
     0.414
TCM_010769
Remorin family protein.
  
     0.413
TCM_020249
DNA-directed RNA polymerase subunit beta.
  
     0.408
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.