STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCM_036425SPla/RYanodine receptor domain-containing protein isoform 1. (527 aa)    
Predicted Functional Partners:
TCM_040704
ARM repeat superfamily protein isoform 2.
   
 
 0.937
TCM_021907
Far-red elongated hypocotyl 1, putative isoform 1.
    
 
 0.933
TCM_001929
Transducin family protein / WD-40 repeat family protein isoform 1.
   
 
 0.885
TCM_007644
Transducin family protein / WD-40 repeat family protein isoform 1.
   
 
 0.885
TCM_043026
LisH/CRA/RING-U-box domains-containing protein isoform 1.
   
 
 0.885
TCM_000906
LisH/CRA/RING-U-box domains-containing protein.
   
 
 0.835
TCM_006377
LisH/CRA/RING-U-box domains-containing protein isoform 1.
   
 
 0.835
TCM_000590
C-terminal LisH motif isoform 1.
   
 
 0.821
TCM_034130
LisH and RanBPM domains containing protein isoform 1.
   
 
0.821
TCM_029941
LisH and RanBPM domains containing protein isoform 1.
   
 
0.821
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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