STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCM_041002ARM repeat superfamily protein isoform 1. (1822 aa)    
Predicted Functional Partners:
TCM_026659
Regulatory particle triple-A ATPase 5A; Belongs to the AAA ATPase family.
   
 
 0.958
TCM_025368
Regulatory particle non-ATPase 12A isoform 1.
    
 
 0.946
TCM_037986
Regulatory particle triple-A ATPase 6A; Belongs to the AAA ATPase family.
    
 
 0.940
TCM_025213
26S proteasome regulatory subunit (RPN5), putative isoform 2.
   
 
 0.934
TCM_039785
Regulatory particle non-ATPase 13.
    
 
 0.915
TCM_014570
26S proteasome, regulatory subunit Rpn7,Proteasome component (PCI) domain isoform 1.
   
 
 0.890
TCM_029400
Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.
    
 
 0.885
TCM_016615
Proteasome component (PCI) domain protein isoform 1.
    
 
 0.859
TCM_000185
26S proteasome non-ATPase regulatory subunit 4 isoform 1.
   
 
 0.853
TCM_006649
26S proteasome non-ATPase regulatory subunit 4.
   
 
 0.853
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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