STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT97449.1Heme-degrading monooxygenase HmoA; Manually curated. (98 aa)    
Predicted Functional Partners:
SDT97473.1
Protein N-acetyltransferase, RimJ/RimL family.
 
     0.808
SDU12641.1
Radical SAM/Cys-rich domain-containing protein.
    
 0.660
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
    
  0.639
SDU15034.1
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
     
 0.629
SDT97416.1
Cobalt-zinc-cadmium efflux system protein.
       0.572
SDT97433.1
Thiosulfate dehydrogenase.
       0.572
SDT97487.1
6-phosphogluconolactonase.
       0.533
SDT97498.1
6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
  
    0.461
SDT97518.1
acyl-CoA thioester hydrolase.
  
    0.455
SDT97511.1
2-keto-3-deoxy-phosphogluconate aldolase.
       0.452
Your Current Organism:
Pseudomonas pohangensis
NCBI taxonomy Id: 364197
Other names: DSM 17875, KACC 11517, P. pohangensis, Pseudomonas pohangensis Weon et al. 2006 emend. Hameed et al. 2014, strain H3-R18
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