STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU12252.1ABC-2 type transport system ATP-binding protein. (315 aa)    
Predicted Functional Partners:
SDU12267.1
ABC-2 type transport system permease protein.
 
 0.996
SDU12237.1
HlyD family secretion protein.
 
  
 0.947
SDU12220.1
Transcriptional regulator, TetR family.
 
    0.819
SDT95933.1
ATP-binding cassette, subfamily B/ATP-binding cassette, subfamily B, MsbA.
0.765
SDU06187.1
Cu-processing system permease protein.
  
 0.763
SDU22978.1
ABC-2 type transport system permease protein.
  
 0.757
SDU06641.1
ATP-binding cassette, subfamily B.
  
0.739
msbA
ATP-binding cassette, subfamily B, MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
0.739
cysN
Adenylylsulfate kinase /sulfate adenylyltransferase subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
     
 0.681
SDU25512.1
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
     
 0.681
Your Current Organism:
Pseudomonas pohangensis
NCBI taxonomy Id: 364197
Other names: DSM 17875, KACC 11517, P. pohangensis, Pseudomonas pohangensis Weon et al. 2006 emend. Hameed et al. 2014, strain H3-R18
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