STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET16016.1Predicted oxidoreductase. (327 aa)    
Predicted Functional Partners:
SEU05831.1
L-fuconolactonase.
    
 0.701
SET70115.1
2,5-diketo-D-gluconate reductase A.
 
 0.673
SET41990.1
Fructokinase.
    
  0.641
SET16042.1
Hypothetical protein.
  
    0.601
SES94501.1
UDPglucose 6-dehydrogenase.
   
 
  0.597
prfB
Bacterial peptide chain release factor 2 (bRF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
       0.561
SEU05866.1
D-threo-aldose 1-dehydrogenase.
  
     0.532
SET33214.1
Aldo/keto reductase.
 
0.530
SES92635.1
TspO/MBR family protein.
    
 
 0.468
SET16068.1
NTE family protein.
       0.438
Your Current Organism:
Paracoccus homiensis
NCBI taxonomy Id: 364199
Other names: DSM 17862, KACC 11518, P. homiensis, Paracoccus homiensis Kim et al. 2006, Paracoccus sp. E33, strain DD-R11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.