STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET33642.1Carboxymethylenebutenolidase. (295 aa)    
Predicted Functional Partners:
SES99205.1
Alcohol dehydrogenase, class IV.
  
 
 0.654
SET42799.1
Alcohol dehydrogenase, class IV.
  
 
 0.654
SET33553.1
Beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
    
  0.634
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
    0.611
SET91824.1
Diacylglycerol kinase family enzyme.
     
 0.544
uxuA
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
       0.498
SET18583.1
Lysophospholipase.
    
 0.482
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.477
SET33586.1
Transcriptional regulator, GntR family.
       0.465
fbp
D-fructose 1,6-bisphosphatase; Belongs to the FBPase class 1 family.
   
 
  0.453
Your Current Organism:
Paracoccus homiensis
NCBI taxonomy Id: 364199
Other names: DSM 17862, KACC 11518, P. homiensis, Paracoccus homiensis Kim et al. 2006, Paracoccus sp. E33, strain DD-R11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.