STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET89735.1Choline dehydrogenase. (529 aa)    
Predicted Functional Partners:
SET51120.1
Hypothetical protein.
    
  0.749
SET89756.1
Sulfoacetaldehyde acetyltransferase.
       0.645
SET89715.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.616
SET17575.1
Hypothetical protein.
    
  0.611
SET18643.1
Tetratricopeptide repeat-containing protein.
    
  0.611
SET45578.1
Tetratricopeptide repeat-containing protein.
    
  0.611
SET89698.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.522
SET15773.1
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
  
  
 
0.515
SET89783.1
Conserved hypothetical integral membrane protein.
       0.443
SET89676.1
TRAP transporter, DctM subunit.
       0.433
Your Current Organism:
Paracoccus homiensis
NCBI taxonomy Id: 364199
Other names: DSM 17862, KACC 11518, P. homiensis, Paracoccus homiensis Kim et al. 2006, Paracoccus sp. E33, strain DD-R11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.