STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEV89709.1Pilus assembly protein CpaB. (287 aa)    
Predicted Functional Partners:
SEV89691.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.987
SEV89653.1
Pilus assembly protein CpaE.
 
  
 0.982
SEV89614.1
Type II secretion system protein F (GspF).
 
  
 0.980
SEV89591.1
Tight adherence protein C.
 
  
 0.979
SEV89539.1
Prepilin peptidase CpaA.
 
  
 0.969
SEV89751.1
Hypothetical protein.
 
  
 0.962
SEV89791.1
Hypothetical protein.
 
  
 0.953
SEV98261.1
Flp pilus assembly protein TadG.
 
  
 0.950
SEV89634.1
Pilus assembly protein CpaF.
 
  
 0.945
SEV98243.1
Hypothetical protein.
 
  
 0.910
Your Current Organism:
Cognatiyoonia koreensis
NCBI taxonomy Id: 364200
Other names: C. koreensis, CIP 109899,, DSM 17925, KACC 11519, Loktanella koreensis, Loktanella koreensis Weon et al. 2006, strain GA2-M3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.