STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEV90239.1Carbohydrate ABC transporter substrate-binding protein, CUT1 family. (415 aa)    
Predicted Functional Partners:
SEV90204.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
  0.963
SEV90225.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
  0.954
SEV90184.1
SnoaL-like polyketide cyclase.
 
     0.898
SEV90347.1
SnoaL-like polyketide cyclase.
 
     0.869
SEV90261.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
 
  0.868
SEV90390.1
Mannose-6-phosphate isomerase, cupin superfamily.
 
     0.841
SEV90464.1
Regulator of RNase E activity RraA.
 
     0.818
SEV90419.1
5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase.
 
     0.815
SEV90325.1
Transcriptional regulator, LacI family.
 
     0.810
hisD
Sulfopropanediol 3-dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
 
     0.794
Your Current Organism:
Cognatiyoonia koreensis
NCBI taxonomy Id: 364200
Other names: C. koreensis, CIP 109899,, DSM 17925, KACC 11519, Loktanella koreensis, Loktanella koreensis Weon et al. 2006, strain GA2-M3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.