STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEV90719.1NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. (214 aa)    
Predicted Functional Partners:
SEV90736.1
Hypothetical protein.
       0.856
SEW41889.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.811
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
 
  
   0.712
SEV90757.1
8-oxo-dGTP pyrophosphatase MutT, NUDIX family.
   
  0.678
SEW25305.1
Reductive dehalogenase.
   
 0.635
SEV90701.1
Aspartate kinase; Belongs to the aspartokinase family.
       0.596
lcdH
Carnitine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
   
 0.590
SEV91340.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
 0.586
SEW42093.1
Arylsulfatase A.
   
 
 0.570
SEW24437.1
Choline-sulfatase.
   
   0.568
Your Current Organism:
Cognatiyoonia koreensis
NCBI taxonomy Id: 364200
Other names: C. koreensis, CIP 109899,, DSM 17925, KACC 11519, Loktanella koreensis, Loktanella koreensis Weon et al. 2006, strain GA2-M3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.