STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEV91670.1SseB protein N-terminal domain-containing protein. (259 aa)    
Predicted Functional Partners:
SEV91652.1
Uracil-DNA glycosylase.
       0.856
SEW27927.1
Rhomboid family protein.
  
     0.765
SEW25943.1
Hypothetical protein.
  
     0.764
SEW38990.1
Hypothetical protein.
  
     0.762
SEW39056.1
Hypothetical protein.
  
     0.754
SEW28270.1
Exodeoxyribonuclease-5.
  
     0.743
SEV96870.1
Hypothetical protein.
  
     0.740
SEW16216.1
Protein RodZ, contains Xre-like HTH and DUF4115 domains.
  
     0.735
SEW24220.1
Hypothetical protein.
  
     0.728
SEV91607.1
Capsular polysaccharide transport system permease protein.
 
     0.719
Your Current Organism:
Cognatiyoonia koreensis
NCBI taxonomy Id: 364200
Other names: C. koreensis, CIP 109899,, DSM 17925, KACC 11519, Loktanella koreensis, Loktanella koreensis Weon et al. 2006, strain GA2-M3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.