STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEV92007.1Putative ABC transport system permease protein. (838 aa)    
Predicted Functional Partners:
SEV92030.1
Putative ABC transport system ATP-binding protein; Manually curated.
 
 
 0.964
SEV92056.1
acyl-CoA thioesterase-1.
 
     0.939
SEV91987.1
Hypothetical protein.
       0.783
SEW41617.1
Hydroxyneurosporene synthase; Non-canonical start codon; manually curated.
  
    0.627
SEW45463.1
Predicted secreted hydrolase.
  
    0.627
SEV92080.1
Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family.
       0.572
SEW45455.1
Putative ABC transport system permease protein.
  
 
 0.569
SEV92102.1
Hypothetical protein.
       0.486
SEV95405.1
Uncharacterized protein involved in cysteine biosynthesis.
  
     0.427
lolD
Lipoprotein-releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
 
 0.421
Your Current Organism:
Cognatiyoonia koreensis
NCBI taxonomy Id: 364200
Other names: C. koreensis, CIP 109899,, DSM 17925, KACC 11519, Loktanella koreensis, Loktanella koreensis Weon et al. 2006, strain GA2-M3
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