STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW08423.12-methylcitrate dehydratase PrpD. (416 aa)    
Predicted Functional Partners:
SEW14932.1
Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.935
SEW38663.1
3-methylfumaryl-CoA hydratase.
 
    0.910
SEW14156.1
2-Methylisocitrate lyase, PEP mutase family.
  
  
 0.889
SEW38651.1
Catechol 2,3-dioxygenase.
 
    0.860
SEW08398.1
Coenzyme Q-binding protein COQ10.
       0.784
SEW17873.1
Hypothetical protein.
 
 
  0.753
SEV96990.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
  
 
  0.744
SEW03311.1
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 
 0.636
SEW42256.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
  
 
  0.587
SEW28679.1
(3S)-malyl-CoA thioesterase; Belongs to the HpcH/HpaI aldolase family.
 
    0.548
Your Current Organism:
Cognatiyoonia koreensis
NCBI taxonomy Id: 364200
Other names: C. koreensis, CIP 109899,, DSM 17925, KACC 11519, Loktanella koreensis, Loktanella koreensis Weon et al. 2006, strain GA2-M3
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