STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW11954.1Transcriptional regulator, GntR family. (245 aa)    
Predicted Functional Partners:
SEW11919.1
Hypothetical protein.
 
     0.903
SEW11938.1
Predicted metal-binding membrane protein.
 
     0.882
SEW25305.1
Reductive dehalogenase.
 
  
  0.822
SEW11853.1
Dimethylsulfoniopropionate demethylase; Belongs to the GcvT family.
 
     0.705
SEW11836.1
Putative quinone oxidoreductase, YhdH/YhfP family.
 
     0.673
SEW11896.1
Uncharacterized damage-inducible protein DinB (forms a four-helix bundle).
       0.583
SEW11975.1
Spermidine/putrescine transport system substrate-binding protein.
       0.578
SEW11876.1
Hypothetical protein.
       0.542
SEW29381.1
Phenylpropionate dioxygenase, large terminal subunit.
 
  
 0.457
SEW12023.1
Protein of unknown function.
       0.454
Your Current Organism:
Cognatiyoonia koreensis
NCBI taxonomy Id: 364200
Other names: C. koreensis, CIP 109899,, DSM 17925, KACC 11519, Loktanella koreensis, Loktanella koreensis Weon et al. 2006, strain GA2-M3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.