STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW15963.1Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. (435 aa)    
Predicted Functional Partners:
SEW15986.1
Protein CcmA, bactofilin family.
 
   
 0.885
SEW17615.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
 
   
 0.772
SEW16081.1
Penicillin-binding protein 1A.
  
   
 0.690
SEW39314.1
Penicillin-binding protein, 1A family.
  
     0.683
SEW21358.1
Cell division protein FtsI (penicillin-binding protein 3).
 
   
 0.638
SEW21151.1
Cell division protein FtsW; Belongs to the SEDS family.
 
  
 0.590
SEW15939.1
Uncharacterized conserved protein, contains ferritin-like DUF455 domain.
       0.568
murE
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
 
  
 0.551
SEW15894.1
Protein of unknown function.
 
     0.546
mrdB
Cell elongation-specific peptidoglycan biosynthesis regulator RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
   
 0.532
Your Current Organism:
Cognatiyoonia koreensis
NCBI taxonomy Id: 364200
Other names: C. koreensis, CIP 109899,, DSM 17925, KACC 11519, Loktanella koreensis, Loktanella koreensis Weon et al. 2006, strain GA2-M3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.