STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW16310.1Tricorn protease C1 domain-containing protein. (445 aa)    
Predicted Functional Partners:
SEW25660.1
TPR repeat-containing protein.
    
 
 0.896
SEW16289.1
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase.
       0.612
SEW24758.1
Pyruvate phosphate dikinase, PEP/pyruvate binding domain.
  
     0.605
SEV91177.1
Conserved repeat domain-containing protein.
  
   0.564
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
 
 0.511
SEV91196.1
Hypothetical protein.
  
   0.478
secD
Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
   
  0.476
SEW26144.1
Hypothetical protein.
  
   0.469
SEW45455.1
Putative ABC transport system permease protein.
   
   0.449
SEW20634.1
Aminopeptidase N.
    
 0.430
Your Current Organism:
Cognatiyoonia koreensis
NCBI taxonomy Id: 364200
Other names: C. koreensis, CIP 109899,, DSM 17925, KACC 11519, Loktanella koreensis, Loktanella koreensis Weon et al. 2006, strain GA2-M3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.