STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW26426.1Hypothetical protein. (168 aa)    
Predicted Functional Partners:
SEW24437.1
Choline-sulfatase.
  
   0.893
SEW42093.1
Arylsulfatase A.
  
   0.893
SEW26445.1
Putative ABC transport system ATP-binding protein.
 
    0.831
SEW26462.1
Putative ABC transport system permease protein.
 
     0.823
SEW26478.1
HlyD family secretion protein.
 
    0.815
SEW26492.1
Polyhydroxyalkanoate synthase.
       0.773
SEW45455.1
Putative ABC transport system permease protein.
  
  
 0.552
SEW26374.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
       0.541
ugpE
Carbohydrate ABC transporter membrane protein 2, CUT1 family; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
       0.541
ugpC
Carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-); Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
       0.541
Your Current Organism:
Cognatiyoonia koreensis
NCBI taxonomy Id: 364200
Other names: C. koreensis, CIP 109899,, DSM 17925, KACC 11519, Loktanella koreensis, Loktanella koreensis Weon et al. 2006, strain GA2-M3
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