STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW32441.14-hydroxy-4-methyl-2-oxoglutarate aldolase. (227 aa)    
Predicted Functional Partners:
SEW28679.1
(3S)-malyl-CoA thioesterase; Belongs to the HpcH/HpaI aldolase family.
    
  0.664
SEW38738.1
beta-methylmalyl-CoA/L-malyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
    
  0.664
SEW32415.1
3-oxoacyl-[acyl-carrier protein] reductase.
    
  0.604
SEW32430.1
NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.539
SEW38637.1
Acetolactate synthase-1/2/3 large subunit; Belongs to the TPP enzyme family.
  
  
  0.529
SEV99181.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
 
   
 0.522
SEW17873.1
Hypothetical protein.
 
   
 0.487
SEW32558.1
Transketolase.
  
  
  0.431
SEW32467.1
Nucleoside-diphosphate-sugar epimerase.
  
     0.420
SEW29554.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
    
  0.416
Your Current Organism:
Cognatiyoonia koreensis
NCBI taxonomy Id: 364200
Other names: C. koreensis, CIP 109899,, DSM 17925, KACC 11519, Loktanella koreensis, Loktanella koreensis Weon et al. 2006, strain GA2-M3
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