STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW32535.1TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein. (338 aa)    
Predicted Functional Partners:
SEW32515.1
TRAP transporter, DctM subunit.
 
 
  0.989
SEW32527.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.891
SEW32507.1
Permease of the drug/metabolite transporter (DMT) superfamily.
 
     0.796
SEW09596.1
TRAP transporter, DctM subunit.
 
    0.701
SEW32543.1
Transcriptional regulator, GntR family.
 
     0.686
SEW32490.1
Uncharacterized conserved protein YgbK, DUF1537 family.
 
     0.678
SEW09711.1
TRAP transporter, DctM subunit.
  
     0.664
SEW32636.1
Threonine/homoserine/homoserine lactone efflux protein.
  
     0.652
SEW32467.1
Nucleoside-diphosphate-sugar epimerase.
  
     0.623
SEW32499.1
Ketol-acid reductoisomerase.
 
     0.604
Your Current Organism:
Cognatiyoonia koreensis
NCBI taxonomy Id: 364200
Other names: C. koreensis, CIP 109899,, DSM 17925, KACC 11519, Loktanella koreensis, Loktanella koreensis Weon et al. 2006, strain GA2-M3
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