STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW40005.1Type VI secretion system protein ImpF. (171 aa)    
Predicted Functional Partners:
SEW40023.1
Type VI secretion system protein ImpH.
 
  
 0.984
SEW40014.1
Type VI secretion system protein ImpG.
 
  
 0.982
SEW40159.1
Type VI secretion system protein ImpK.
 
  
 0.980
SEW39977.1
Type VI secretion system protein ImpB.
 
  
 0.962
SEW39986.1
Type VI secretion system protein ImpC.
 
  
 0.952
SEW40033.1
Type VI secretion system protein VasG; Belongs to the ClpA/ClpB family.
 
  
 0.932
SEW39996.1
Type VI secretion system secreted protein Hcp.
 
  
 0.916
SEW39967.1
Type VI secretion system protein ImpA.
 
  
 0.900
SEW40167.1
Type VI secretion system protein ImpJ.
 
  
 0.899
SEW39958.1
FHA domain protein.
 
  
 0.871
Your Current Organism:
Cognatiyoonia koreensis
NCBI taxonomy Id: 364200
Other names: C. koreensis, CIP 109899,, DSM 17925, KACC 11519, Loktanella koreensis, Loktanella koreensis Weon et al. 2006, strain GA2-M3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.