STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW40595.1D-amino-acid dehydrogenase. (416 aa)    
Predicted Functional Partners:
SEV98445.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.967
SEW02683.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.967
SEW41889.1
Glutamate synthase (NADPH/NADH) large chain.
  
 
 0.797
SEW02663.1
Sarcosine oxidase subunit delta.
  
 0.729
SEV98424.1
Sarcosine oxidase subunit delta.
  
  0.703
SEW02702.1
Sarcosine oxidase subunit gamma.
  
  0.695
SEV98461.1
Sarcosine oxidase subunit gamma.
  
  0.681
SEW40576.1
Hypothetical protein.
       0.639
SEW40586.1
Regulator of protease activity HflC, stomatin/prohibitin superfamily.
       0.639
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.575
Your Current Organism:
Cognatiyoonia koreensis
NCBI taxonomy Id: 364200
Other names: C. koreensis, CIP 109899,, DSM 17925, KACC 11519, Loktanella koreensis, Loktanella koreensis Weon et al. 2006, strain GA2-M3
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