STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW42809.1Choline dehydrogenase; Belongs to the GMC oxidoreductase family. (1336 aa)    
Predicted Functional Partners:
SEW08343.1
Cytochrome c, mono-and diheme variants.
  
 
 0.904
SEW42801.1
Calcineurin-like phosphoesterase.
      0.841
SEW23185.1
Protein of unknown function.
    
  0.696
SEW39751.1
TPR repeat-containing protein.
    
  0.696
SEW42038.1
Sulfotransferase family protein.
    
  0.696
SEW44614.1
Hypothetical protein.
    
  0.696
SEW01022.1
Ankyrin repeat.
  
 
  0.691
SEW45940.1
Ankyrin repeat.
  
 
  0.682
SEW42818.1
Predicted ATPase.
 
     0.673
SEW04656.1
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 
  0.660
Your Current Organism:
Cognatiyoonia koreensis
NCBI taxonomy Id: 364200
Other names: C. koreensis, CIP 109899,, DSM 17925, KACC 11519, Loktanella koreensis, Loktanella koreensis Weon et al. 2006, strain GA2-M3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.