STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW42863.1ATP-binding cassette, subfamily B. (610 aa)    
Predicted Functional Partners:
SEW00978.1
ATP-binding cassette, subfamily C, LapB.
   
 
0.924
SEW22567.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 
     
0.898
SEW42854.1
23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.814
SEW42871.1
ATP-binding cassette, subfamily B, multidrug efflux pump.
 
    
0.790
SEW02859.1
ATP-binding cassette, subfamily B.
  
 
0.755
SEW29728.1
ATPase family associated with various cellular activities (AAA).
   
 0.719
SEW42895.1
8-oxo-dGTP pyrophosphatase MutT, NUDIX family.
  
    0.703
SEW42886.1
poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
    0.697
SEW42906.1
Molecular chaperone Hsp33; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.
       0.694
SEW31350.1
ABC-2 type transport system ATP-binding protein.
 
 
0.679
Your Current Organism:
Cognatiyoonia koreensis
NCBI taxonomy Id: 364200
Other names: C. koreensis, CIP 109899,, DSM 17925, KACC 11519, Loktanella koreensis, Loktanella koreensis Weon et al. 2006, strain GA2-M3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.